|Rho and RNase play a central role in FMN riboswitch regulation in Corynebacterium glutamicum.
Nucleic.Acids.Res. 43: 520-529. 2015.
N. Takemoto, Y. Tanaka and M. Inui.
|Riboswitches are RNA elements that regulate gene expression in response
to their ligand. Although these regulations are thought to be performed
without any aid of other factors, recent studies suggested the participation
of protein factors such as transcriptional termination factor Rho and RNase
in some riboswitch regulations. However, to what extent these protein factors
contribute to the regulation was unclear. Here, we studied the regulatory
mechanism of the flavin mononucleotide (FMN) riboswitch of Corynebacterium glutamicum which controls the expression of downstream ribM gene. Our results showed that this riboswitch downregulates both ribM mRNA and RibM protein levels in FMN-rich cells. Analysis of mRNA stability and chromatin immunoprecipitation-real-time PCR analysis targeting RNA polymerase suggested the involvement of the mRNA degradation and premature transcriptional termination in this regulation, respectively. Simultaneous disruption of RNase E/G and Rho function completely abolished the regulation at the mRNA level. Also, the regulation at the protein level was largely diminished. However, some FMN-dependent regulation at the protein level remained, suggesting the presence of other minor regulatory mechanisms. Altogether, we demonstrated for the first time that two protein factors, Rho and RNase E/G, play a central role in the riboswitch-mediated gene expression control.